DBMS > GraphDB vs. H2 vs. MongoDB vs. MySQL

System Properties Comparison GraphDB vs. H2 vs. MongoDB vs. MySQL

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Editorial information provided by DB-Engines

Name

Description

Enterprise-ready RDF and graph database with efficient reasoning, cluster and external index synchronization support. It supports also SQL JDBC access to Knowledge Graph and GraphQL over SPARQL.

Full-featured RDBMS with a small footprint, either embedded into a Java application or used as a database server.

One of the most popular document stores available both as a fully managed cloud service and for deployment on self-managed infrastructure

Widely used open source RDBMS

Primary database model

Key/Value like access via memcached API

Secondary database models

Spatial DBMS

Spatial DBMS
Search engine

integrated Lucene index, currently in MongoDB Atlas only.
Time Series DBMS

Time Series Collections introduced in Release 5.0
Vector DBMS

currently available in the MongoDB Atlas cloud service only

Document store
Spatial DBMS

DB-Engines Ranking measures the popularity of database management systems
Trend Chart

Score	3.32
Rank	#91	Overall
	#6	Graph DBMS
	#4	RDF stores

Score	8.13
Rank	#49	Overall
	#31	Relational DBMS

Score	421.65
Rank	#5	Overall
	#1	Document stores

Score	1083.74
Rank	#2	Overall
	#2	Relational DBMS

Website

Technical documentation

graphdb.ontotext.com/documentation

www.h2database.com/html/main.html

www.mongodb.com/docs/manual

dev.mysql.com/doc

Social network pages

Developer

Ontotext

Thomas Mueller

MongoDB, Inc

Oracle

since 2010, originally MySQL AB, then Sun

Initial release

2000

2005

2009

1995

Current release

10.4, October 2023

2.2.220, July 2023

6.0.7, June 2023

8.3.0, January 2024

License

Commercial or Open Source

commercial

Some plugins of GraphDB Workbench are open sourced

Open Source

dual-licence (Mozilla public license, Eclipse public license)

Open Source

MongoDB Inc.'s Server Side Public License v1. Prior versions were published under GNU AGPL v3.0. Commercial licenses are also available.

Open Source

GPL version 2. Commercial licenses with extended functionallity are available

Cloud-based only

Only available as a cloud service

MongoDB available as DBaaS (MongoDB Atlas)

DBaaS offerings (sponsored links)

Database as a Service

Providers of DBaaS offerings, please contact us to be listed.

MongoDB Atlas: Global multi-cloud database with unmatched data distribution and mobility across AWS, Azure, and Google Cloud, built-in automation for resource and workload optimization, and so much more.

Aiven for MySQL: Fully managed MySQL, deployable in the cloud of your choice, with seamless integrations and lightning-fast setup.

Implementation language

Java

C++

C and C++

Server operating systems

All OS with a Java VM
Linux
OS X
Windows

All OS with a Java VM

Linux
OS X
Solaris
Windows

FreeBSD
Linux
OS X
Solaris
Windows

Data scheme

schema-free and OWL/RDFS-schema support; RDF shapes

yes

schema-free

Although schema-free, documents of the same collection often follow the same structure. Optionally impose all or part of a schema by defining a JSON schema.

yes

Typing

predefined data types such as float or date

yes

string, integer, double, decimal, boolean, date, object_id, geospatial

yes

XML support

Some form of processing data in XML format, e.g. support for XML data structures, and/or support for XPath, XQuery or XSLT.

yes

Secondary indexes

yes, supports real-time synchronization and indexing in SOLR/Elastic search/Lucene and GeoSPARQL geometry data indexes

yes

SQL

Support of SQL

stored SPARQL accessed as SQL using Apache Calcite through JDBC/ODBC

yes

Read-only SQL queries via the MongoDB Atlas SQL Interface

yes

with proprietary extensions

APIs and other access methods

GeoSPARQL
GraphQL
GraphQL Federation
Java API
JDBC
RDF4J API
RDFS
RIO
Sail API
Sesame REST HTTP Protocol
SPARQL 1.1

JDBC
ODBC

GraphQL
HTTP REST
Prisma
proprietary protocol using JSON

ADO.NET
JDBC
ODBC
Proprietary native API

Supported programming languages

.Net
C#
Clojure
Java
JavaScript (Node.js)
PHP
Python
Ruby
Scala

Java

Actionscript

unofficial driver
C
C#
C++
Clojure

unofficial driver
ColdFusion

unofficial driver
D

unofficial driver
Dart

unofficial driver
Delphi

unofficial driver
Erlang
Go
Groovy

unofficial driver
Haskell
Java
JavaScript
Kotlin
Lisp

unofficial driver
Lua

unofficial driver
MatLab

unofficial driver
Perl
PHP
PowerShell

unofficial driver
Prolog

unofficial driver
Python
R

unofficial driver
Ruby
Rust
Scala
Smalltalk

unofficial driver
Swift

Ada
C
C#
C++
D
Delphi
Eiffel
Erlang
Haskell
Java
JavaScript (Node.js)
Objective-C
OCaml
Perl
PHP
Python
Ruby
Scheme
Tcl

Server-side scripts

Stored procedures

well-defined plugin interfaces; JavaScript server-side extensibility

Java Stored Procedures and User-Defined Functions

JavaScript

yes

proprietary syntax

Triggers

yes

in MongoDB Atlas only

yes

Partitioning methods

Methods for storing different data on different nodes

none

Sharding

Partitioned by hashed, ranged, or zoned sharding keys. Live resharding allows users to change their shard keys as an online operation with zero downtime.

horizontal partitioning, sharding with MySQL Cluster or MySQL Fabric

Replication methods

Methods for redundantly storing data on multiple nodes

Multi-source replication

With clustering: 2 database servers on different computers operate on identical copies of a database

Multi-Source deployments with MongoDB Atlas Global Clusters
Source-replica replication

Multi-source replication
Source-replica replication

MapReduce

Offers an API for user-defined Map/Reduce methods

yes

Consistency concepts

Methods to ensure consistency in a distributed system

Immediate Consistency, Eventual consistency (configurable in cluster mode per master or individual client request)

Immediate Consistency

Eventual Consistency

can be individually decided for each read operation
Immediate Consistency

default behaviour

Immediate Consistency

Foreign keys

Referential integrity

yes

Constraint checking

yes

typically not used, however similar functionality with DBRef possible

yes

not for MyISAM storage engine

Transaction concepts

Support to ensure data integrity after non-atomic manipulations of data

ACID

Multi-document ACID Transactions with snapshot isolation

ACID

not for MyISAM storage engine

Concurrency

Support for concurrent manipulation of data

yes

yes, multi-version concurrency control (MVCC)

yes

table locks or row locks depending on storage engine

Durability

Support for making data persistent

yes

optional, enabled by default

yes

In-memory capabilities

Is there an option to define some or all structures to be held in-memory only.

yes

In-memory storage engine introduced with MongoDB version 3.2

yes

User concepts

Access control

Default Basic authentication through RDF4J client, or via Java when run with cURL, default token-based in the Workbench or via Rest API, optional access through OpenID or Kerberos single sign-on.

fine grained access rights according to SQL-standard

Access rights for users and roles

Users with fine-grained authorization concept

no user groups or roles

More information provided by the system vendor

Specific characteristics

Ontotext GraphDB is a semantic database engine that allows organizations to build...
» more

MongoDB provides an integrated suite of cloud database and data services to accelerate...
» more

Competitive advantages

GraphDB allows you to link text and data in big knowledge graphs. It’s easy to experiment...
» more

Built around the flexible document data model and unified API, MongoDB is a developer...
» more

Typical application scenarios

Metadata enrichment and management, linked data publishing, semantic inferencing...
» more

AI-enriched intelligent apps (Continental, Telefonica, Iron Mountain) Internet of...
» more

Key customers

GraphDB provides a platform for building next-generation AI and Knowledge Graph...
» more

ADP, Adobe, Amadeus, AstraZeneca, Auto Trader, Barclays, BBVA, Bosch, Cisco, CERN,...
» more

Market metrics

GraphDB is the most utilized semantic triplestore for mission-critical enterprise...
» more

Hundreds of millions downloads, over 150,000+ Atlas clusters provisioned every month...
» more

Licensing and pricing models

GraphDB Free is a non-commercial version and is free to use. GraphDB Enterprise edition...
» more

MongoDB database server: Server-Side Public License (SSPL) . Commercial licenses...
» more

News

Case study: Policy Enforcement Automation With Semantics
2 May 2024

Okay, RAG… We Have a Problem
26 April 2024

Scaling Understanding with the Help of Feedback Loops, Knowledge Graphs and NLP
19 April 2024

How Knowledge Graphs Power Data Mesh and Data Fabric
10 April 2024

Building Smarter Financial Services: The Role of Semantic Technologies, Knowledge Graphs and Generative AI
3 April 2024

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and for displaying vendor-provided information such as key customers, competitive advantages and market metrics.